Mario Valle Web

Refereed papers

[1] S. Moretti, B. Laurenczy, W. H. Gharib, B. Castella, A. Kuzniar, H. Schabauer, R. A. Studer, M. Valle, N. Salamin, H. Stockinger, and M. Robinson-Rechavi, Selectome update: quality control and computational improvements to a database of positive selection, Nucleic Acids Research, vol. 42, no. D1, pp. D917-D921, 2014. [ bib | doi | file ]
[2] M. Valle, H. Schabauer, C. Pacher, H. Stockinger, A. Stamatakis, M. Robinson-Rechavi, and N. Salamin, Optimisation strategies for fast detection of positive selection on phylogenetic trees, Bioinformatics, vol. 30, no. 8, pp. 1129-1137, 2014. [ bib | doi | file ]
[3] M. Valle, Visualization: A Cognition Amplifier, International Journal of Quantum Chemistry, vol. 113, no. 17, pp. 2040-2052, 2013. [ bib | doi ]
[4] A. R. Oganov, A. O. Lyakhov, and M. Valle, How Evolutionary Crystal Structure Prediction Works - and Why, Accounts of Chemical Research, vol. 44, no. 3, pp. 227-237, 2011. [ bib | doi ]
[5] A. O. Lyakhov, A. R. Oganov, and M. Valle, How to predict very large and complex crystal structures, Computer Physics Communications, vol. 181, pp. 1623-1632, Sept. 2010. [ bib | doi | file ]
[6] M. Valle and A. R. Oganov, Crystal fingerprint space - a novel paradigm for studying crystal-structure sets, Acta Crystallographica Section A, vol. 66, pp. 507-517, Sept. 2010. (PDF from the publisher of Foundations of Crystallography Online). [ bib | doi | file | publisher site ]
[7] A. R. Oganov, Y. Ma, A. O. Lyakhov, M. Valle, and C. Gatti, Evolutionary Crystal Structure Prediction as a Method for the Discovery of Minerals and Materials, Reviews in Mineralogy and Geochemistry, vol. 71, no. 1, pp. 271-298, 2010. [ bib | doi | file ]
[8] Y. Ma, M. Eremets, A. R. Oganov, Y. Xie, I. Trojan, S. Medvedev, A. O. Lyakhov, M. Valle, and V. Prakapenka, Transparent dense sodium, Nature, vol. 458, pp. 182-185, Mar. 14 2009. [ bib | doi ]
[9] A. R. Oganov and M. Valle, How to quantify energy landscapes of solids, The Journal of Chemical Physics, vol. 130, p. 104504, Mar. 14 2009. [ bib | doi | file ]
[10] M. Valle, STM3: a chemistry visualization platform, Zeitschrift für Kristallographie, vol. 220, no. 5-6, pp. 585-588, 2005. (PDF from the publisher: Oldenbourg Wissenschaftsverlag, München). [ bib | file | publisher site ]
[11] S. Cocito, S. Sgorbini, A. Peirano, and M. Valle, 3-D reconstruction of biological objects using underwater video technique and image processing, Journal of Experimental Marine Biology and Ecology, vol. 297, pp. 57-70, Dec. 2003. [ bib | doi | file ]

Books and book chapters

[1] A. O. Lyakhov, A. R. Oganov, and M. Valle, Crystal structure prediction using evolutionary approach, in Modern Methods of Crystal Structure Prediction (A. R. Oganov, ed.), Wiley-VCH, Nov. 2010. [ bib | file ]
[2] A. R. Oganov, Y. Ma, A. Lyakhov, M. Valle, and C. Gatti, Evolutionary crystal structure prediction and novel high-pressure phases, in High-Pressure Crystallography: From Fundamental Phenomena to Technological Applications (E. Boldyreva and P. Dera, eds.), pp. 293-325, Springer, Sept. 2010. [ bib ]
[3] J. Favre and M. Valle, AVS and AVS/Express, in The Visualization Handbook (C. Hansen and C. Johnson, eds.), pp. 655-672, Academic Press, Dec. 2004. [ bib | file ]
[4] R. Marmo, M. Valle, and C. Zannoni, Introduzione alla visualizzazione scientifica. Editrice Il Rostro, 2004. [ bib | file ]

Conference papers and posters

[1] A. Rigano, V. Galli, R. Giulietti, T. Leidi, M. Valle, I. F. Sbalzarini, and C. S. D. Castillia, OMEGA: an open source environment to facilitate the execution of motion analysis workflows, to estimate error and to share results, in 10th Annual OME Users Meeting, (Paris), June 2 - 3 2015. (poster). [ bib | conference site ]
[2] M. Valle, Crystal fingerprints space a novel paradigm to study crystal strucures sets, in 2nd Joint AIC-SILS Conference, (Florence), p. 92, AIC-SILS, Sept. 15-18 2014. [ bib ]
[3] H. Schabauer, M. Valle, C. Pacher, H. Stockinger, A. Stamatakis, M. Robinson-Rechavi, and N. Salamin, FastCodeML: Optimizing and Parallelizing CodeML for the Branch-Site Model, in SIB days 2013, (Bienne, CH), Jan. 28-29 2013. (poster). [ bib | conference site ]
[4] H. Schabauer, M. Valle, C. Pacher, H. Stockinger, A. Stamatakis, M. Robinson-Rechavi, Z. Yang, and N. Salamin, SlimCodeML: An Optimized Version of CodeML for the Branch-Site Model, in IEEE International Workshop on High Performance Computational Biology (HiCOMB'12), (Shanghai, P.R. China), May 21 2012. [ bib | conference site ]
[5] H. Schabauer, M. Valle, H. Stockinger, N. Salamin, and M. Robinson-Rechavi, Toward a Supercomputing Approach to Large Scale Darwinian Evolution, in Phylogenetics: New data, new Phylogenetic challenges, (Cambridge, UK), June 20-24 2011. (poster). [ bib | conference site ]
[6] M. Valle and A. R. Oganov, Crystal Structures Classifier for an Evolutionary Algorithm Structure Predictor, in Visual Analytics Science and Technology, 2008. VAST '08. IEEE Symposium on, pp. 11-18, Oct. 19 - 24 2008. (One of the paper images has been selected for the proceedings' cover). [ bib | doi | file | conference site ]
[7] A. Lyakhov, A. Oganov, and M. Valle, Increasing the effectiveness of evolutionary crystal structure prediction using fingerprint function, Acta Crystallographica Section A, vol. 64, p. C206, Aug. 2008. [ bib | doi ]
[8] A. R. Oganov, M. Valle, A. Lyakhov, Y. Ma, and Y. Xie, Evolutionary crystal structure prediction and its applications to materials at extreme conditions, Acta Crystallographica Section A, vol. 64, pp. C41-C42, Aug. 2008. [ bib | doi ]
[9] M. Valle, Chemistry visualization tools in an integrated discovery cycle, in EGEE'07 Conference, (Budapest, Hungary), p. 99, Oct. 2007. [ bib | file ]
[10] M. Valle, Visualization support to chemistry research, in Proceeding of IEEE Visualization 2006, (Baltimore, USA), Oct. 29 - Nov. 3 2006. (poster - selected as one of the 5 Best Poster Candidates of IEEE Visualization 2006). [ bib | conference site ]
[11] A. Perrig, M. Valle, M. Farhat, E. Parkinson, J. Favre, and F. Avellan, Onboard flow visualization in a Pelton turbine bucket, in Proceedings of the 23rd IAHR Symposium on Hydraulic Machinery and Systems, (Yokohama, Japan), Oct. 17-21 2006. [ bib | conference site ]
[12] M. Valle, Representations that promote cognition: the case of chemistry visualization tools, in Proceeding of SIGGRAPH 2006, (Boston, USA), July 30 - Aug. 3 2006. (poster). [ bib | conference site ]
[13] M. Valle, Representations that promote cognition: the case of chemistry visualization tools, in Proceeding of the third symposium on Applied Perception in Graphics and Visualization, (Boston, USA), July 28-30 2006. (poster). [ bib | conference site ]
[14] R. Marmo and M. Valle, Visual attention mechanisms for information visualization, in HUMAN AND MACHINE PERCEPTION: Communication, Interaction and Integration (V. Cantoni et al., eds.), Proceedings of HMP 2004, (Cagliari, Italy), pp. 111-118, World Scientific Publishing, Sept. 2005. [ bib | file | conference site ]
[15] M. Valle, J. Favre, E. Parkinson, A. Perrig, and M. Farhat, Scientific Data Management for Visualization Implementation Experience, in Proceedings Simulation and Visualization 2005, (Magdeburg, Germany), Mar. 3 - 4 2005. [ bib | file | conference site ]
[16] A. Perrig, M. Valle, M. Farhat, E. Parkinson, J. Favre, and F. Avellan, Numerical Flow Analysis in a Pelton Turbine Bucket, in Proceedings of the 22nd IAHR Symposium on Hydraulic Machinery and Systems, (Stockholm, Sweden), June 29 - July 2 2004. [ bib | conference site ]
[17] J. Favre and M. Valle, An In-House Development for Visualization in Molecular Science, in Fourth LACSI Symposium, (Santa Fe, New Mexico), Oct. 27 - 29 2003. (poster). [ bib | conference site ]

Other (not refereed or for non specialists)

[1] A. Rigano, V. Galli, J. M. Clark, L. E. Pereira, L. Grossi, J. Luban, R. Giulietti, T. Leidi, E. Hunter, M. Valle, I. F. Sbalzarini, and C. Strambio-De-Castillia, Omega: a software tool for the management, analysis, and dissemination of intracellular trafficking data that incorporates motion type classification and quality control, bioRxiv, 2018. [ bib | doi | file ]
[2] M. Valle, La pedagogia Montessori e le nuove tecnologie. Appunti Montessori, il leone verde, 2017. [ bib | file ]
[3] M. Valle, Ansichten eines Wissenschaftlers zu Maria Montessoris Erzählung von Gott, der keine Hände hat, in Kosmische Erzählungen in der Montessori-Pädagogik (E. Eckert and M. Fehrer, eds.), pp. 57-70, LIT Verlag, 3 ed., Nov. 2015. [ bib | file ]
[4] M. Valle, Durch die augen eines wissenschaftlers – ein ungewohnter blick auf montessori, Das Kind, vol. 55, pp. 43-59, 2014. [ bib ]
[5] M. Valle, Una mappa concettuale, Il Quaderno Montessori, vol. 117, pp. 50-51, 2013. [ bib ]
[6] M. Valle, La madre di tutte le obiezioni, Il Quaderno Montessori, vol. 118/119, pp. 23-25, 2013. [ bib ]
[7] M. Valle, More is different, Il Quaderno Montessori, vol. 113, pp. 52-56, 2012. [ bib ]
[8] M. Valle, Vedere per capire, archi - rivista svizzera di architettura, ingegneria e urbanistica, vol. 3, pp. 65-68, June 2009. [ bib ]
[9] M. Valle, Supercalcolatori e superbambini, Il Quaderno Montessori, vol. 100, pp. 9-15, 2009. [ bib ]
[10] A. R. Oganov, Y. Ma, C. W. Glass, and M. Valle, Evolutionary crystal structure prediction: overview of the USPEX method and some of its applications, Psi-k Newsletter, vol. 84, pp. 1-10, Dec. 2007. [ bib | file ]
[11] R. Marmo and M. Valle, Visualizzazione scientifica: un aiuto per capire, Mondo Digitale (AICA), vol. anno IV, pp. 45-58, Dec. 2005. [ bib | file ]
[12] M. Valle, User-in-the-loop: Supporto al Computational Steering in ambiente di simulazione, in Virtuality 2002, (Torino, Italy), Oct. 28-29 2002. [ bib | conference site ]
[13] M. Valle, Un sistema di visualizzazione immersiva ad alte prestazioni, in Virtuality 2001, (Torino, Italy), Oct. 29-30 2001. [ bib | conference site ]

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