Mario Valle Web

publications.bib

@ARTICLE{Cocito2003,
  TITLE = {{3-D} reconstruction of biological objects using underwater video technique and image processing},
  AUTHOR = {Silvia Cocito and Sergio Sgorbini and Andrea Peirano and Mario Valle},
  JOURNAL = {Journal of Experimental Marine Biology and Ecology},
  YEAR = {2003},
  MONTH = DEC,
  NUMBER = {1},
  PAGES = {57--70},
  VOLUME = {297},
  DOI = {10.1016/S0022-0981(03)00369-1},
  FILE = {Paper:file\:///C\:\\mv\\Publications\\3D-publication.pdf:PDF},
  KEYWORDS = {refereed},
  MVPUBTYPE = {refereed},
  LANGID = {english},
  URL = {http://mariovalle.name/publications/3D-publication.pdf}
}
@INCOLLECTION{Favre2004,
  TITLE = {{AVS and AVS/Express}},
  AUTHOR = {Jean Favre and Mario Valle},
  BOOKTITLE = {{The Visualization Handbook}},
  PUBLISHER = {Academic Press},
  YEAR = {2004},
  EDITOR = {Chuck Hansen and Chris Johnson},
  MONTH = DEC,
  PAGES = {655--672},
  FILE = {Paper:file\:///C\:\\mv\\Publications\\ch33%20favre.pdf:PDF},
  KEYWORDS = {books},
  MVPUBTYPE = {books},
  LANGID = {english},
  URL = {http://www.elsevierdirect.com/product.jsp?isbn=9780123875822}
}
@INPROCEEDINGS{Favre2003,
  TITLE = {{An In-House Development for Visualization in Molecular Science}},
  AUTHOR = {Jean Favre and Mario Valle},
  BOOKTITLE = {Fourth LACSI Symposium},
  YEAR = {2003},
  ADDRESS = {Santa Fe, New Mexico},
  MONTH = OCT # { 27 -- 29},
  NOTE = {(poster)},
  CONFSITE = {http://lacsi.rice.edu/symposium/agenda_2003/},
  FILE = {Paper:file\:///C\:\\mv\\Publications\\posters\\STM3-LACSI-poster\\STM3.jpg:JPG image},
  LANGID = {english},
  KEYWORDS = {poster},
  MVPUBTYPE = {poster}
}
@ARTICLE{Lyakhov2008,
  TITLE = {{Increasing the effectiveness of evolutionary crystal structure prediction using fingerprint function}},
  AUTHOR = {Lyakhov, A.O. and Oganov, A. and Valle, M.},
  JOURNAL = {Acta Crystallographica Section A},
  YEAR = {2008},
  MONTH = AUG,
  NUMBER = {a1},
  PAGES = {C206},
  VOLUME = {64},
  DOI = {10.1107/S0108767308093380},
  FILE = {Paper:file\:///C\:\\mv\\Publications\\a38860.pdf:PDF},
  LANGID = {english},
  KEYWORDS = {conferences},
  MVPUBTYPE = {conferences}
}
@INCOLLECTION{Lyakhov2010a,
  TITLE = {Crystal Structure Prediction Using Evolutionary Approach},
  AUTHOR = {Andriy O. Lyakhov and Artem R. Oganov and Mario Valle},
  BOOKTITLE = {{Modern Methods of Crystal Structure Prediction}},
  PUBLISHER = {Wiley-VCH},
  YEAR = {2010},
  EDITOR = {Artem R. Oganov},
  MONTH = NOV,
  KEYWORDS = {books},
  MVPUBTYPE = {books},
  LANGID = {english},
  URL = {http://www.wiley-vch.de/publish/en/books/bySubjectPH00/ISBN3-527-40939-4/short/?sID=ou0r6rp7eaadonst3lfkjtktd1}
}
@ARTICLE{Lyakhov2010,
  TITLE = {How to predict very large and complex crystal structures},
  AUTHOR = {Andriy O. Lyakhov and Artem R. Oganov and Mario Valle},
  JOURNAL = {Computer Physics Communications},
  YEAR = {2010},
  MONTH = SEP,
  NUMBER = {9},
  PAGES = {1623--1632},
  VOLUME = {181},
  DOI = {10.1016/j.cpc.2010.06.007},
  FILE = {Paper:file\:///C\:\\mv\\Publications\\USPEX-LargeComplexSystems-2010.pdf:PDF},
  ISSN = {0010-4655},
  KEYWORDS = {refereed},
  MVPUBTYPE = {refereed},
  LANGID = {english},
  URL = {http://www.sciencedirect.com/science/article/B6TJ5-5093N74-7/2/4796d929fdc0016b5830eb5b45ff0cc7}
}
@ARTICLE{Ma2009,
  TITLE = {Transparent dense sodium},
  AUTHOR = {Ma, Yanming and Eremets, Mikhail and Oganov, Artem R. and Xie, Yu and Trojan, Ivan and Medvedev, Sergey and Lyakhov, Andriy O. and Valle, Mario and Prakapenka, Vitali},
  JOURNAL = {Nature},
  YEAR = {2009},
  MONTH = MAR # { 14},
  NUMBER = {7235},
  PAGES = {182--185},
  VOLUME = {458},
  DOI = {10.1038/nature07786},
  FILE = {Paper:file\:///C\:\\mv\\Publications\\nature07786_oganov.pdf:PDF},
  ISSN = {0028-0836},
  KEYWORDS = {refereed},
  MVPUBTYPE = {refereed},
  LANGID = {english},
  PUBLISHER = {Macmillan Publishers Limited}
}
@INPROCEEDINGS{Marmo2005,
  TITLE = {Visual attention mechanisms for information visualization},
  AUTHOR = {Roberto Marmo and Mario Valle},
  BOOKTITLE = {HUMAN AND MACHINE PERCEPTION: Communication, Interaction and Integration},
  YEAR = {2005},
  ADDRESS = {Cagliari, Italy},
  EDITOR = {Virginio Cantoni and others},
  MONTH = SEP,
  PAGES = {111--118},
  PUBLISHER = {World Scientific Publishing},
  SERIES = {Proceedings of HMP 2004},
  CONFSITE = {http://pacs.unica.it/hmp04/index.html},
  FILE = {Paper:file\:///C\:\\mv\\Publications\\111-118MARMOetAll-F.pdf:PDF},
  KEYWORDS = {conferences},
  MVPUBTYPE = {conferences},
  LANGID = {english},
  URL = {http://www.worldscibooks.com/compsci/5321.html}
}
@ARTICLE{Marmo2005a,
  TITLE = {Visualizzazione scientifica: un aiuto per capire},
  AUTHOR = {Roberto Marmo and Mario Valle},
  JOURNAL = {Mondo Digitale (AICA)},
  YEAR = {2005},
  MONTH = DEC,
  NUMBER = {4},
  PAGES = {45--58},
  VOLUME = {anno IV},
  FILE = {Paper:file\:///C\:\\mv\\Publications\\Marmo_p._45-58.pdf:PDF},
  LANGID = {italian},
  KEYWORDS = {general},
  MVPUBTYPE = {general},
  URL = {http://www.mondodigitale.net/Rivista/06_numero_1/Marmo_p._45-58.pdf}
}
@BOOK{Marmo2004,
  TITLE = {Introduzione alla visualizzazione scientifica},
  AUTHOR = {Roberto Marmo and Mario Valle and Cinzia Zannoni},
  PUBLISHER = {{Editrice Il Rostro}},
  YEAR = {2004},
  KEYWORDS = {books},
  MVPUBTYPE = {books},
  LANGID = {italian},
  URL = {http://mariovalle.name/libro/index.html}
}
@ARTICLE{Moretti2014,
  TITLE = {Selectome update: quality control and computational improvements to a database of positive selection},
  AUTHOR = {Moretti, S{\'e}bastien and Laurenczy, Balazs and Gharib, Walid H. and Castella, Bris{\'e}{\"i}s and Kuzniar, Arnold and Schabauer, Hannes and Studer, Romain A. and Valle, Mario and Salamin, Nicolas and Stockinger, Heinz and Robinson-Rechavi, Marc},
  JOURNAL = {Nucleic Acids Research},
  YEAR = {2014},
  NUMBER = {D1},
  PAGES = {D917--D921},
  VOLUME = {42},
  ABSTRACT = {Selectome (http://selectome.unil.ch/) is a database of positive selection, based on a branch-site likelihood test. This model estimates the number of nonsynonymous substitutions (dN) and synonymous substitutions (dS) to evaluate the variation in selective pressure (dN/dS ratio) over branches and over sites. Since the original release of Selectome, we have benchmarked and implemented a thorough quality control procedure on multiple sequence alignments, aiming to provide minimum false-positive results. We have also improved the computational efficiency of the branch-site test implementation, allowing larger data sets and more frequent updates. Release 6 of Selectome includes all gene trees from Ensembl for Primates and Glires, as well as a large set of vertebrate gene trees. A total of 6810 gene trees have some evidence of positive selection. Finally, the web interface has been improved to be more responsive and to facilitate searches and browsing.},
  DOI = {10.1093/nar/gkt1065},
  KEYWORDS = {refereed},
  MVPUBTYPE = {refereed},
  LANGID = {english},
  URL = {http://nar.oxfordjournals.org/content/42/D1/D917.abstract}
}
@ARTICLE{Oganov2011,
  TITLE = {{How Evolutionary Crystal Structure Prediction Works --- and Why}},
  AUTHOR = {Artem R. Oganov and Andriy O. Lyakhov and Mario Valle},
  JOURNAL = {Accounts of Chemical Research},
  YEAR = {2011},
  NUMBER = {3},
  PAGES = {227--237},
  VOLUME = {44},
  DOI = {10.1021/ar1001318},
  EPRINT = {http://pubs.acs.org/doi/pdf/10.1021/ar1001318},
  FILE = {Paper:file\:///C\:\\mv\\Publications\\ar1001318.pdf:PDF},
  LANGID = {english},
  KEYWORDS = {refereed},
  MVPUBTYPE = {refereed}
}
@ARTICLE{Oganov2007,
  TITLE = {Evolutionary crystal structure prediction: overview of the {USPEX} method and some of its applications},
  AUTHOR = {Artem R. Oganov and Yanming Ma and Colin W. Glass and Mario Valle},
  JOURNAL = {Psi-k Newsletter},
  YEAR = {2007},
  MONTH = DEC,
  PAGES = {1--10},
  VOLUME = {84},
  FILE = {Paper:file\:///C\:\\mv\\Publications\\Highlight_84.pdf:PDF},
  KEYWORDS = {general},
  MVPUBTYPE = {general},
  LANGID = {english},
  URL = {http://www.psi-k.org/newsletters/News_84/Highlight_84.pdf}
}
@INCOLLECTION{Oganov2010a,
  TITLE = {Evolutionary crystal structure prediction and novel high-pressure phases},
  AUTHOR = {Artem R. Oganov and Yanming Ma and Andriy Lyakhov and Mario Valle and Carlo Gatti},
  BOOKTITLE = {High-Pressure Crystallography: From Fundamental Phenomena to Technological Applications},
  PUBLISHER = {Springer},
  YEAR = {2010},
  EDITOR = {Elena Boldyreva and Przemyslaw Dera},
  MONTH = SEP,
  PAGES = {293--325},
  LANGID = {english},
  KEYWORDS = {books},
  MVPUBTYPE = {books}
}
@ARTICLE{Oganov2010,
  TITLE = {{Evolutionary Crystal Structure Prediction as a Method for the Discovery of Minerals and Materials}},
  AUTHOR = {Oganov, Artem R. and Ma, Yanming and Lyakhov, Andriy O. and Valle, Mario and Gatti, Carlo},
  JOURNAL = {Reviews in Mineralogy and Geochemistry},
  YEAR = {2010},
  NUMBER = {1},
  PAGES = {271--298},
  VOLUME = {71},
  DOI = {10.2138/rmg.2010.71.13},
  FILE = {Paper:file\:///C\:\\mv\\Publications\\RevMineralGeochem-2010.pdf:PDF},
  KEYWORDS = {refereed},
  MVPUBTYPE = {refereed},
  LANGID = {english},
  URL = {http://rimg.geoscienceworld.org/cgi/content/abstract/71/1/271}
}
@ARTICLE{Oganov2009,
  TITLE = {How to quantify energy landscapes of solids},
  AUTHOR = {Artem R. Oganov and Mario Valle},
  JOURNAL = {The Journal of Chemical Physics},
  YEAR = {2009},
  MONTH = MAR # { 14},
  NUMBER = {10},
  PAGES = {104504},
  VOLUME = {130},
  DOI = {10.1063/1.3079326},
  EID = {104504},
  FILE = {Paper:file\:///C\:\\mv\\Publications\\Landscapes-JChemPhys-2009.pdf:PDF},
  KEYWORDS = {refereed},
  MVPUBTYPE = {refereed},
  LANGID = {english},
  URL = {http://link.aip.org/link/?JCP/130/104504/1}
}
@ARTICLE{Oganov2008,
  TITLE = {{Evolutionary crystal structure prediction and its applications to materials at extreme conditions}},
  AUTHOR = {Artem R. Oganov and Mario Valle and Andriy Lyakhov and Yanming Ma and Yu Xie},
  JOURNAL = {Acta Crystallographica Section A},
  YEAR = {2008},
  MONTH = AUG,
  NUMBER = {a1},
  PAGES = {C41--C42},
  VOLUME = {64},
  DOI = {10.1107/S0108767308098681},
  FILE = {Paper:file\:///C\:\\mv\\Publications\\a38330.pdf:PDF},
  LANGID = {english},
  KEYWORDS = {conferences},
  MVPUBTYPE = {conferences}
}
@INPROCEEDINGS{Perrig2004,
  TITLE = {{N}umerical {F}low {A}nalysis in a {P}elton {T}urbine {B}ucket},
  AUTHOR = {Alexandre Perrig and Mario Valle and Mohamed Farhat and Etienne Parkinson and Jean Favre and Fran\c{c}ois Avellan},
  BOOKTITLE = {Proceedings of the 22nd IAHR Symposium on Hydraulic Machinery and Systems},
  YEAR = {2004},
  ADDRESS = {Stockholm, Sweden},
  MONTH = JUN # { 29 -- } # JUL # { 2},
  CONFSITE = {http://www.swedpower.se/IAHR2004/authors_papers.htm},
  FILE = {Paper:file\:///C\:\\mv\\Publications\\paper_IAHR2004_perrig.pdf:PDF},
  LANGID = {english},
  KEYWORDS = {conferences},
  MVPUBTYPE = {conferences}
}
@INPROCEEDINGS{Perrig2006,
  TITLE = {Onboard flow visualization in a {P}elton turbine bucket},
  AUTHOR = {Alexandre Perrig and Mario Valle and Mohamed Farhat and Etienne Parkinson and Jean Favre and Fran\c{c}ois Avellan},
  BOOKTITLE = {Proceedings of the 23rd IAHR Symposium on Hydraulic Machinery and Systems},
  YEAR = {2006},
  ADDRESS = {Yokohama, Japan},
  MONTH = OCT # { 17--21},
  CONFSITE = {http://stork.mach.me.ynu.ac.jp/},
  FILE = {Paper:file\:///C\:\\mv\\Publications\\iahr.pdf:PDF},
  LANGID = {english},
  KEYWORDS = {conferences},
  MVPUBTYPE = {conferences}
}
@INPROCEEDINGS{Rigano2015,
  AUTHOR = {Alessandro Rigano and Vanni Galli and Raffaello Giulietti and Tiziano Leidi and Mario Valle and Ivo F. Sbalzarini and Caterina Strambio {De} Castillia},
  TITLE = {{OMEGA: an open source environment to facilitate the execution of motion analysis workflows, to estimate error and to share results}},
  BOOKTITLE = {10th Annual OME Users Meeting},
  YEAR = {2015},
  ADDRESS = {Paris},
  MONTH = JUN # { 2 -- 3},
  NOTE = {(poster)},
  CONFSITE = {https://www.openmicroscopy.org/site/community/minutes/meetings/10th-annual-users-meeting-june-2015},
  FILE = {Paper:file\:///C\:\\mv\\Publications\\posters\\OME\\Rigano_et_al_OME_poster.pdf:PDF},
  KEYWORDS = {poster},
  LANGID = {english},
  MVPUBTYPE = {poster}
}
@INPROCEEDINGS{Schabauer2013,
  TITLE = {{FastCodeML: Optimizing and Parallelizing CodeML for the Branch-Site Model}},
  AUTHOR = {Hannes Schabauer and Mario Valle and Christoph Pacher and Heinz Stockinger and Alexandros Stamatakis and Marc Robinson-Rechavi and Nicolas Salamin},
  BOOKTITLE = {{SIB days 2013}},
  YEAR = {2013},
  ADDRESS = {Bienne, CH},
  MONTH = JAN # { 28--29},
  NOTE = {(poster)},
  CONFSITE = {http://www.newton.ac.uk/programmes/PLG/plgw05.html},
  FILE = {poster:C\:\\mv\\Publications\\poster-sib-days-2013.pdf:PDF},
  KEYWORDS = {poster},
  MVPUBTYPE = {poster},
  LANGID = {english},
  OWNER = {mvalle},
  TIMESTAMP = {2013.01.31}
}
@INPROCEEDINGS{Schabauer2012,
  TITLE = {{SlimCodeML: An Optimized Version of CodeML for the Branch-Site Model}},
  AUTHOR = {Hannes Schabauer and Mario Valle and Christoph Pacher and Heinz Stockinger and Alexandros Stamatakis and Marc Robinson-Rechavi and Ziheng Yang and Nicolas Salamin},
  BOOKTITLE = {IEEE International Workshop on High Performance Computational Biology (HiCOMB'12)},
  YEAR = {2012},
  ADDRESS = {Shanghai, P.R. China},
  MONTH = MAY # { 21},
  CONFSITE = {http://www.hicomb.org},
  FILE = {Paper:file\:///C\:\\mv\\Publications\\PID2209451.pdf:PDF},
  LANGID = {english},
  KEYWORDS = {conferences},
  MVPUBTYPE = {conferences}
}
@INPROCEEDINGS{Schabauer2011,
  TITLE = {{Toward a Supercomputing Approach to Large Scale Darwinian Evolution}},
  AUTHOR = {Hannes Schabauer and Mario Valle and Heinz Stockinger and Nicolas Salamin and Marc Robinson-Rechavi},
  BOOKTITLE = {{Phylogenetics: New data, new Phylogenetic challenges}},
  YEAR = {2011},
  ADDRESS = {Cambridge, UK},
  MONTH = JUN # { 20--24},
  NOTE = {(poster)},
  CONFSITE = {http://www.newton.ac.uk/programmes/PLG/plgw05.html},
  FILE = {Poster:file\:///C\:\\mv\\Publications\\Poster_PLGW05_2011.pdf:PDF},
  LANGID = {english},
  KEYWORDS = {poster},
  MVPUBTYPE = {poster}
}
@INCOLLECTION{Valle2015,
  TITLE = {{Ansichten eines Wissenschaftlers zu Maria Montessoris Erz{\"a}hlung von Gott, der keine H{\"a}nde hat}},
  AUTHOR = {Mario Valle},
  BOOKTITLE = {Kosmische Erz{\"a}hlungen in der Montessori-P{\"a}dagogik},
  PUBLISHER = {LIT Verlag},
  YEAR = {2015},
  EDITION = {3},
  EDITOR = {Ela Eckert and Malve Fehrer},
  MONTH = NOV,
  PAGES = {57--70},
  ISBN = {978-3-643-13207-9},
  KEYWORDS = {general},
  LANGID = {ngerman},
  MVPUBTYPE = {general},
  URL = {http://www.lit-verlag.de/isbn/3-643-13207-9}
}
@CONFERENCE{Valle2001,
  TITLE = {Un sistema di visualizzazione immersiva ad alte prestazioni},
  AUTHOR = {Mario Valle},
  BOOKTITLE = {Virtuality 2001},
  YEAR = {2001},
  ADDRESS = {Torino, Italy},
  MONTH = OCT # { 29--30},
  CONFSITE = {http://virtualityconference.it/2002/virtuality2001/Mario%20Valle.html},
  FILE = {Paper:file\:///C\:\\mv\\Publications\\Virtuality2001.pdf:PDF},
  LANGID = {italian},
  KEYWORDS = {general},
  MVPUBTYPE = {general}
}
@CONFERENCE{Valle2002,
  TITLE = {{User-in-the-loop: Supporto al Computational Steering in ambiente di simulazione}},
  AUTHOR = {Mario Valle},
  BOOKTITLE = {Virtuality 2002},
  YEAR = {2002},
  ADDRESS = {Torino, Italy},
  MONTH = OCT # { 28--29},
  CONFSITE = {http://virtualityconference.it/2002/italiano/giolitti_primo.html},
  FILE = {Paper:file\:///C\:\\mv\\Publications\\PaperAVS-2002.pdf:PDF},
  LANGID = {italian},
  KEYWORDS = {general},
  MVPUBTYPE = {general}
}
@ARTICLE{Valle2005a,
  TITLE = {{STM3}: a chemistry visualization platform},
  AUTHOR = {Mario Valle},
  JOURNAL = {Zeitschrift f{\"u}r Kristallographie},
  YEAR = {2005},
  NOTE = {(PDF from the publisher: Oldenbourg Wissenschaftsverlag, M{\"u}nchen)},
  NUMBER = {5--6},
  PAGES = {585--588},
  VOLUME = {220},
  FILE = {Paper:file\:///C\:\\mv\\Publications\\zfk0505-06_585-588.pdf:PDF},
  KEYWORDS = {refereed},
  MVPUBTYPE = {refereed},
  LANGID = {english},
  PUBSITE = {http://www.oldenbourg.de/verlag/zkristallogr/},
  URL = {http://mariovalle.name/publications/zfk0505-06_585-588.pdf}
}
@INPROCEEDINGS{Valle2006,
  TITLE = {Representations that promote cognition: the case of chemistry visualization tools},
  AUTHOR = {Mario Valle},
  BOOKTITLE = {Proceeding of the third symposium on {Applied Perception in Graphics and Visualization}},
  YEAR = {2006},
  ADDRESS = {Boston, USA},
  MONTH = JUL # { 28--30},
  NOTE = {(poster)},
  CONFSITE = {http://www.apgv.org/},
  FILE = {Paper:file\:///C\:\\mv\\Publications\\posters\\APGV\\apgv-valle.ppt:PowerPoint},
  LANGID = {english},
  KEYWORDS = {poster},
  MVPUBTYPE = {poster}
}
@INPROCEEDINGS{Valle2006a,
  TITLE = {Visualization support to chemistry research},
  AUTHOR = {Mario Valle},
  BOOKTITLE = {{Proceeding of IEEE Visualization 2006}},
  YEAR = {2006},
  ADDRESS = {Baltimore, USA},
  MONTH = OCT # { 29 -- } # NOV # { 3},
  NOTE = {(poster - selected as one of the 5 Best Poster Candidates of IEEE Visualization 2006)},
  CONFSITE = {http://vis.computer.org/vis2006/},
  FILE = {Paper:file\:///C\:\\mv\\Publications\\posters\\IEEE-Vis2006\\vis06-valle.ppt:PowerPoint},
  LANGID = {english},
  KEYWORDS = {poster},
  MVPUBTYPE = {poster}
}
@INPROCEEDINGS{Valle2006b,
  TITLE = {Representations that promote cognition: the case of chemistry visualization tools},
  AUTHOR = {Mario Valle},
  BOOKTITLE = {Proceeding of {SIGGRAPH 2006}},
  YEAR = {2006},
  ADDRESS = {Boston, USA},
  MONTH = JUL # { 30 -- } # AUG # { 3},
  NOTE = {(poster)},
  CONFSITE = {http://www.siggraph.org/s2006/main.php?f=conference&p=posters&s=28},
  FILE = {Paper:file\:///C\:\\mv\\Publications\\posters\\APGV\\apgv-valle.ppt:PowerPoint},
  LANGID = {english},
  KEYWORDS = {poster},
  MVPUBTYPE = {poster}
}
@INPROCEEDINGS{Valle2007,
  TITLE = {Chemistry visualization tools in an integrated discovery cycle},
  AUTHOR = {Mario Valle},
  BOOKTITLE = {EGEE'07 Conference},
  YEAR = {2007},
  ADDRESS = {Budapest, Hungary},
  MONTH = OCT,
  PAGES = {99},
  KEYWORDS = {conferences},
  MVPUBTYPE = {conferences},
  LANGID = {english},
  OWNER = {mvalle},
  TIMESTAMP = {2014.11.28},
  URL = {http://indico.cern.ch/event/18714/session/6/contribution/222/author/0}
}
@ARTICLE{Valle2009,
  TITLE = {Supercalcolatori e superbambini},
  AUTHOR = {Mario Valle},
  JOURNAL = {Il Quaderno Montessori},
  YEAR = {2009},
  PAGES = {9--15},
  VOLUME = {100},
  FILE = {Paper:file\:///C\:\\mv\\Publications\\IlQuadernoMontessori100.pdf:PDF},
  LANGID = {italian},
  KEYWORDS = {general},
  MVPUBTYPE = {general}
}
@ARTICLE{Valle2009a,
  TITLE = {Vedere per capire},
  AUTHOR = {Mario Valle},
  JOURNAL = {archi - rivista svizzera di architettura, ingegneria e urbanistica},
  YEAR = {2009},
  MONTH = JUN,
  PAGES = {65--68},
  VOLUME = {3},
  FILE = {Paper:file\:///C\:\\mv\\Publications\\ArchiIngegneria.pdf:PDF},
  LANGID = {italian},
  KEYWORDS = {general},
  MVPUBTYPE = {general}
}
@ARTICLE{Valle2012,
  TITLE = {More is different},
  AUTHOR = {Mario Valle},
  JOURNAL = {Il Quaderno Montessori},
  YEAR = {2012},
  PAGES = {52--56},
  VOLUME = {113},
  FILE = {Paper:C\:\\mv\\Publications\\Il Quaderno Montessori\\more-is-different\\more is different.pdf:PDF},
  KEYWORDS = {general},
  MVPUBTYPE = {general},
  LANGID = {italian},
  OWNER = {mvalle},
  TIMESTAMP = {2013.01.29}
}
@ARTICLE{Valle2013,
  TITLE = {{Visualization: A Cognition Amplifier}},
  AUTHOR = {Mario Valle},
  JOURNAL = {{International Journal of Quantum Chemistry}},
  YEAR = {2013},
  NUMBER = {17},
  PAGES = {2040--2052},
  VOLUME = {113},
  DOI = {10.1002/qua.24480},
  FILE = {Paper:file\:///C\:\\mv\\Publications\\10.1002_qua.24480.pdf:PDF},
  ISSN = {1097-461X},
  LANGID = {english},
  KEYWORDS = {refereed},
  MVPUBTYPE = {refereed}
}
@ARTICLE{Valle2013a,
  TITLE = {Una mappa concettuale},
  AUTHOR = {Mario Valle},
  JOURNAL = {Il Quaderno Montessori},
  YEAR = {2013},
  PAGES = {50--51},
  VOLUME = {117},
  KEYWORDS = {general},
  MVPUBTYPE = {general},
  LANGID = {italian},
  OWNER = {mvalle},
  TIMESTAMP = {2015.02.02}
}
@ARTICLE{Valle2013b,
  TITLE = {La madre di tutte le obiezioni},
  AUTHOR = {Mario Valle},
  JOURNAL = {Il Quaderno Montessori},
  YEAR = {2013},
  PAGES = {23--25},
  VOLUME = {118/119},
  KEYWORDS = {general},
  MVPUBTYPE = {general},
  LANGID = {italian},
  OWNER = {mvalle},
  TIMESTAMP = {2015.02.02}
}
@INPROCEEDINGS{Valle2014a,
  TITLE = {Crystal fingerprints space a novel paradigm to study crystal strucures sets},
  AUTHOR = {Mario Valle},
  BOOKTITLE = {2nd Joint AIC-SILS Conference},
  YEAR = {2014},
  ADDRESS = {Florence},
  MONTH = SEP # { 15--18},
  ORGANIZATION = {AIC-SILS},
  PAGES = {92},
  KEYWORDS = {conferences},
  LANGUAGE = {english},
  MVPUBTYPE = {conferences},
  LANGID = {english},
  OWNER = {mvalle},
  TIMESTAMP = {2014.09.18}
}
@ARTICLE{Valle2014b,
  TITLE = {Durch die Augen eines Wissenschaftlers – Ein ungewohnter Blick auf Montessori},
  AUTHOR = {Mario Valle},
  JOURNAL = {Das Kind},
  YEAR = {2014},
  PAGES = {43--59},
  VOLUME = {55},
  LANGID = {ngerman},
  KEYWORDS = {general},
  MVPUBTYPE = {general},
  OWNER = {mvalle},
  TIMESTAMP = {2015.02.02}
}
@INPROCEEDINGS{Valle2005,
  TITLE = {{Scientific Data Management for Visualization Implementation Experience}},
  AUTHOR = {Mario Valle and Jean Favre and Etienne Parkinson and Alexandre Perrig and Mohamed Farhat},
  BOOKTITLE = {Proceedings Simulation and Visualization 2005},
  YEAR = {2005},
  ADDRESS = {Magdeburg, Germany},
  MONTH = MAR # { 3 -- 4},
  CONFSITE = {http://www.simvis.org/},
  FILE = {Paper:file\:///C\:\\mv\\Publications\\SDB-paper.pdf:PDF},
  LANGID = {english},
  KEYWORDS = {conferences},
  MVPUBTYPE = {conferences},
  URL = {http://mariovalle.name/sdm/SDBpaper.pdf}
}
@INPROCEEDINGS{Valle2008,
  TITLE = {{Crystal Structures Classifier for an Evolutionary Algorithm Structure Predictor}},
  AUTHOR = {Mario Valle and Artem R. Oganov},
  BOOKTITLE = {Visual Analytics Science and Technology, 2008. VAST '08. IEEE Symposium on},
  YEAR = {2008},
  MONTH = OCT # { 19 -- 24},
  NOTE = {(One of the paper images has been selected for the proceedings' cover)},
  PAGES = {11--18},
  CONFSITE = {http://vis.computer.org/VisWeek2008/index.html},
  DOI = {10.1109/VAST.2008.4677351},
  FILE = {Paper:file\:///C\:\\mv\\Publications\\fingerprints.pdf:PDF},
  LANGID = {english},
  KEYWORDS = {conferences},
  MVPUBTYPE = {conferences},
  URL = {http://vis.computer.org/VisWeek2008/vast/sessions_papers.html}
}
@ARTICLE{Valle2010,
  TITLE = {{Crystal fingerprint space {--} a novel paradigm for studying crystal-structure sets}},
  AUTHOR = {Valle, Mario and Oganov, Artem R.},
  JOURNAL = {Acta Crystallographica Section A},
  YEAR = {2010},
  MONTH = SEP,
  NOTE = {(PDF from the publisher of Foundations of Crystallography Online)},
  NUMBER = {5},
  PAGES = {507--517},
  VOLUME = {66},
  DOI = {10.1107/S0108767310026395},
  FILE = {Paper:file\:///C\:\\mv\\Publications\\xg5005.pdf:PDF},
  LANGID = {english},
  KEYWORDS = {refereed},
  MVPUBTYPE = {refereed},
  PUBSITE = {http://journals.iucr.org/a/issues/2010/05/00/issconts.html},
  URL = {http://mariovalle.name/publications/ActaCrystPaper.pdf}
}
@ARTICLE{Valle2014,
  TITLE = {Optimisation strategies for fast detection of positive selection on phylogenetic trees},
  AUTHOR = {Valle, Mario and Schabauer, Hannes and Pacher, Christoph and Stockinger, Heinz and Stamatakis, Alexandros and Robinson-Rechavi, Marc and Salamin, Nicolas},
  JOURNAL = {Bioinformatics},
  YEAR = {2014},
  NUMBER = {8},
  PAGES = {1129--1137},
  VOLUME = {30},
  DOI = {10.1093/bioinformatics/btt760},
  LANGID = {english},
  KEYWORDS = {refereed},
  MVPUBTYPE = {refereed},
  URL = {http://bioinformatics.oxfordjournals.org/content/30/8/1129}
}
@BOOK{Valle2017,
  TITLE = {La pedagogia Montessori e le nuove tecnologie},
  PUBLISHER = {il leone verde},
  YEAR = {2017},
  AUTHOR = {Mario Valle},
  SERIES = {Appunti Montessori},
  ISBN = {978-88-6580-174-1},
  KEYWORDS = {general},
  LANGID = {italian},
  MVPUBTYPE = {general},
  URL = {http://mariovalle.name/montessori/libro-nuove-tecnologie/index.html}
}
@ARTICLE{Rigano2018,
  AUTHOR = {Rigano, Alessandro and Galli, Vanni and Clark, Jasmine M. and Pereira, Lara E. and Grossi, Loris and Luban, Jeremy and Giulietti, Raffaello and Leidi, Tiziano and Hunter, Eric and Valle, Mario and Sbalzarini, Ivo F. and Strambio-De-Castillia, Caterina},
  TITLE = {OMEGA: a software tool for the management, analysis, and dissemination of intracellular trafficking data that incorporates motion type classification and quality control},
  JOURNAL = {bioRxiv},
  YEAR = {2018},
  __MARKEDENTRY = {[Mario Valle:6]},
  ABSTRACT = {MOTIVATION: Particle tracking coupled with time-lapse microscopy is critical for understanding the dynamics of intracellular processes of clinical importance. Under the impulse of advances in microscopic spatiotemporal resolution and automated computational methods, this field is increasingly amenable to multi-dimensional high-throughput data collection schemas (Snijder et al, 2012). Typically, complex particle tracking datasets generated by individual laboratories are produced with incompatible methodologies and cannot be compared to each other. There is therefore an unmet need for data management systems that facilitate data standardization, meta-analysis and structured data dissemination. The integration of analysis, visualization and quality control capabilities into such systems would eliminate the need for manually transferring the data to diverse downstream analysis tools while at the same time lying the foundations for shared trajectory data, particle tracking, and motion analysis standards. RESULTS: Here, we present Open Microscopy Environment inteGrated Analysis (OMEGA), a cross-platform data management, analysis and visualization system, for particle tracking data with particular emphasis on results from viral and vesicular trafficking experiments. OMEGA provides easy to use graphical interfaces to implement integrated particle tracking and motion analysis workflows while keeping track of error propagation and data provenance. Specifically, OMEGA: 1) imports image data and metadata from data management tools such as Open Microscopy Environment Remote Objects (OMERO; Allan et al., 2012); 2) tracks intracellular particles moving across time series of image planes; 3) facilitates parameter optimization and trajectory results inspection and validation; 4) performs downstream trajectory analysis and motion type classification; 5) estimates the uncertainty associated with motion analysis; and, 6) stores and facilitates dissemination of analysis results and analysis definition metadata on the basis of our newly proposed Minimum Information About Particle Tracking Experiments (MIAPTE; (Rigano \& Strambio-De-Castillia, 2016; 2017) guidelines in combination with the OME-XML data model (Goldberg et al, 2005).},
  DOI = {10.1101/251850},
  EPRINT = {https://www.biorxiv.org/content/early/2018/02/23/251850.full.pdf},
  LANGID = {english},
  MVPUBTYPE = {general},
  PUBLISHER = {Cold Spring Harbor Laboratory},
  URL = {https://www.biorxiv.org/content/early/2018/02/23/251850}
}
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