STM4 – to do

Color by global data
PDB reader: put a switch to select the structure end keyword. Put a model selection slider
Add a method to set a personalized color schema (Info Set) to be used by default

Dummy atoms (read by Mol2 sometimes) and the corresponding special bond type (working on)
Merge structures that takes an array of structures as input
Select residue within distance
Special bonds by a lace of spheres or using textures with transparency
Remove a quarter of a structure (module Crop Structure)
In fpStudio reader input K lines as globals
Add a toggle in the Reader to load all steps (a combination of multiframe plus run)
Ported the Align Structures modules: should be checked because seems not to do anything

Consolidate preload functions (and remove unneeded parts inside Preload() function)
Review of the MoleculeOut output building routines to see if they are really needed or could be simplified.
Display unit cell using lines (instead of the current edges of structured mesh)
Investigate how to avoid (unneeded) data copies
Cache the derived data (like fractional coordinates)

Is a new version of MolViewer needed?
Trajectories as first class data
Data mining (autocorrelation, clustering)
Geometric equivalent positions
Investigate toolkits like ObjCryst
Read using OpenBabel
Point light to highlight important parts (details by light: point light on the important point)
Zeolites: find pores, cavities and channels
How to verify congruence between PDB and corresponding DCD file?
Far plane usage to simplify the scene
Counter of the active readers/writers. When goes to zero, unload the plugins
Multidimensional data analysis
Remove random/uninteresting motions